How do I cite the Cancer Genome Atlas?
An example of a proper acknowledgement is: “The results here are in whole or part based upon data generated by the TCGA Research Network: https://www.cancer.gov/tcga.” Citation of original TCGA marker papers producing the data utilized is optional.
What is the goal of the Cancer Genome Atlas?
The Cancer Genome Atlas (TCGA) is a public funded project that aims to catalogue and discover major cancer-causing genomic alterations to create a comprehensive “atlas” of cancer genomic profiles.
When was the Cancer Genome Atlas created?
The Cancer Genome Atlas (TCGA) is a joint project of the National Cancer Institute (NCI) and the National Human Genome Research Institute (NHGRI). TCGA began in 2006 as a pilot project focused on three cancer types: lung, ovarian, and glioblastoma.
How do I find my TCGA database?
Popular Answers (1)
- Connect to https://tcga-data.nci.nih.gov/tcga/
- Select the cancer subtype you are interested in (i.e breast invasive carcinoma)
- Select mRNA.
- Now you can see a table where rows are representing different patients.
What is Pan-Cancer Atlas?
The Pan-Cancer Atlas provides a panoramic view of the oncogenic processes that contribute to human cancer.
What kind of information will be made available by the Cancer Genome Atlas?
This atlas will enable the research community to reach the long-range objective of understanding cancer at the molecular level and will help transform the bench-to-bedside research paradigm with prevention, early diagnosis, targeted treatment and cure.
What kind of information will be made available by the Cancer Genome Atlas TCGA )?
TCGA’s Pan-Cancer Atlas A collection of cross-cancer analyses delving into overarching themes on cancer, including cell-of-origin patterns, oncogenic processes, and signaling pathways.
What is GEPIA2?
GEPIA2: an enhanced web server for large-scale expression profiling and interactive analysis.
Who is involved in the Cancer Genome Atlas?
The Cancer Genome Atlas (TCGA) is a joint effort of the National Cancer Institute (NCI) and the National Human Genome Research Institute (NHGRI), which are both part of the National Institutes of Health, U.S. Department of Health and Human Services. The Cancer Genome Atlas will assess the feasibility of a full-scale effort…
Is the TCGA data available for all cancers?
Moratoria on all cancer types are now lifted and all TCGA data are available without restrictions on their use in publications or presentations.
When is a global analysis published on a tumor type?
A global analysis publication has been published on that tumor type; or 18 months after 100 cases of a given tumor type have shipped from the Biospecimen Core Resource to characterization and sequencing centers or 18 months after final sample shipment for rare tumor projects; or
Which is the best publication for rare tumor projects?
For rare tumor projects a global analysis publication includes data from a majority of the qualified cases and much of the existing data on that tumor type.